IL_6RBE_019

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

6RBE|1|2|U|313, 6RBE|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBE_019 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1067

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6RBE|1|2|U|311
6RBE|1|2|A|312
6RBE|1|2|U|313
6RBE|1|2|C|314
6RBE|1|2|A|315
6RBE|1|2|A|316
*
6RBE|1|2|U|348
6RBE|1|2|U|349
6RBE|1|2|U|350
6RBE|1|2|C|351
6RBE|1|2|A|352
6RBE|1|2|A|353
6RBE|1|2|C|354
6RBE|1|2|G|355

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8-A

Chain L

40S ribosomal protein S11-A

Chain X

40S ribosomal protein S23-A