IL_6RBE_032

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6RBE|1|2|A|579

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBE_032 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1702

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6RBE|1|2|G|562
6RBE|1|2|U|563
6RBE|1|2|G|564
6RBE|1|2|C|565
6RBE|1|2|C|566
6RBE|1|2|A|567
6RBE|1|2|G|568
*
6RBE|1|2|C|575
6RBE|1|2|G|576
6RBE|1|2|G|577
6RBE|1|2|U|578
6RBE|1|2|A|579
6RBE|1|2|A|580
6RBE|1|2|U|581
6RBE|1|2|U|582
6RBE|1|2|C|583

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S3

Chain X

40S ribosomal protein S23-A

Chain e

40S ribosomal protein S30-A