IL_6RBE_033

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6RBE|1|2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBE_033 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1514

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

6RBE|1|2|G|616
6RBE|1|2|U|617
6RBE|1|2|U|618
6RBE|1|2|A|619
6RBE|1|2|A|620
6RBE|1|2|A|621
6RBE|1|2|A|622
*
6RBE|1|2|U|1104
6RBE|1|2|C|1105

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23-A