IL_6RBE_044

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

6RBE|1|2|G|876

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBE_044 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.1742

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6RBE|1|2|C|874
6RBE|1|2|G|875
6RBE|1|2|G|876
6RBE|1|2|G|877
6RBE|1|2|G|878
*
6RBE|1|2|C|950
6RBE|1|2|A|951
6RBE|1|2|A|952
6RBE|1|2|G|953

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S1-A

Chain N

40S ribosomal protein S13