IL_6RBE_053

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

6RBE|1|2|C|1158, 6RBE|1|2|C|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBE_053 not in the Motif Atlas

Homologous match to IL_4V88_443

Geometric discrepancy: 0.2639

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

6RBE|1|2|A|1157
6RBE|1|2|C|1158
6RBE|1|2|C|1159
6RBE|1|2|A|1160
*
6RBE|1|2|U|1617
6RBE|1|2|C|1618
6RBE|1|2|C|1619
6RBE|1|2|C|1620
6RBE|1|2|U|1621

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16-A

Chain c

40S ribosomal protein S28-A