IL_6RBE_062

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGG*UCUGUGA

Length

10 nucleotides

Bulged bases

6RBE|1|2|U|1432, 6RBE|1|2|G|1435

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBE_062 not in the Motif Atlas

Homologous match to IL_4V88_451

Geometric discrepancy: 0.4874

The information below is about IL_4V88_451

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_97255.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6RBE|1|2|U|1276
6RBE|1|2|G|1277
6RBE|1|2|G|1278
*
6RBE|1|2|U|1430
6RBE|1|2|C|1431
6RBE|1|2|U|1432
6RBE|1|2|G|1433
6RBE|1|2|U|1434
6RBE|1|2|G|1435
6RBE|1|2|A|1436

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S3

Chain K

40S ribosomal protein S10-A

Chain d

40S ribosomal protein S29-A