IL_6RBE_083

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAG*CAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBE_083 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.3646

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6RBE|1|2|U|1687
6RBE|1|2|U|1688
6RBE|1|2|A|1689
6RBE|1|2|G|1690
*
6RBE|1|2|C|1711
6RBE|1|2|A|1712
6RBE|1|2|G|1713
6RBE|1|2|A|1714

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6-A