IL_6S05_166

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAUA*UUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S05_166 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.3401

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6S05|1|A|A|3167
6S05|1|A|A|3168
6S05|1|A|U|3169
6S05|1|A|A|3170
*
6S05|1|A|U|3280
6S05|1|A|U|3281
6S05|1|A|U|3282
6S05|1|A|U|3283

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain f

60S ribosomal protein L33-A