IL_6S0X_052

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6S0X|1|A|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0X_052 not in the Motif Atlas

Homologous match to IL_7A0S_063

Geometric discrepancy: 0.0985

The information below is about IL_7A0S_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6S0X|1|A|C|1730
6S0X|1|A|G|1731
6S0X|1|A|U|1732
6S0X|1|A|A|1733
6S0X|1|A|A|1734
6S0X|1|A|C|1735
*
6S0X|1|A|G|1740
6S0X|1|A|G|1741
6S0X|1|A|A|1742
6S0X|1|A|G|1743
6S0X|1|A|A|1744
6S0X|1|A|A|1745
6S0X|1|A|G|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA