3D structure

PDB id
6S0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.42 Å

Loop

Sequence
CAUUAG*CAACGAUG
Length
14 nucleotides
Bulged bases
6S0X|1|a|U|252, 6S0X|1|a|C|288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S0X_107 not in the Motif Atlas
Homologous match to IL_4LFB_011
Geometric discrepancy: 0.2475
The information below is about IL_4LFB_011
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

6S0X|1|a|C|250
6S0X|1|a|A|251
6S0X|1|a|U|252
6S0X|1|a|U|253
6S0X|1|a|A|254
6S0X|1|a|G|255
*
6S0X|1|a|C|285
6S0X|1|a|A|286
6S0X|1|a|A|287
6S0X|1|a|C|288
6S0X|1|a|G|289
6S0X|1|a|A|290
6S0X|1|a|U|291
6S0X|1|a|G|292

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain l
30S ribosomal protein S12
Chain q
30S ribosomal protein S17

Coloring options:


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