IL_6S0X_109

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GA*UGAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0X_109 not in the Motif Atlas

Geometric match to IL_4PDB_002

Geometric discrepancy: 0.2686

The information below is about IL_4PDB_002

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

6S0X|1|a|G|300
6S0X|1|a|A|301
*
6S0X|1|a|U|312
6S0X|1|a|G|313
6S0X|1|a|A|314
6S0X|1|a|U|315
6S0X|1|a|C|316

Current chains

Chain a

16S ribosomal RNA

Nearby chains