IL_6S0X_173

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CUUAGUAC*GGACCGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0X_173 not in the Motif Atlas

Geometric match to IL_8C3A_148

Geometric discrepancy: 0.3092

The information below is about IL_8C3A_148

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.9

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6S0X|1|A|C|2678
6S0X|1|A|U|2679
6S0X|1|A|U|2680
6S0X|1|A|A|2681
6S0X|1|A|G|2682
6S0X|1|A|U|2683
6S0X|1|A|A|2684
6S0X|1|A|C|2685
*
6S0X|1|A|G|2690
6S0X|1|A|G|2691
6S0X|1|A|A|2692
6S0X|1|A|C|2693
6S0X|1|A|C|2694
6S0X|1|A|G|2695
6S0X|1|A|G|2696

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain I

50S ribosomal protein L14