IL_6S13_001
3D structure
- PDB id
- 6S13 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.58 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S13_001 not in the Motif Atlas
- Geometric match to IL_7A0S_001
- Geometric discrepancy: 0.1057
- The information below is about IL_7A0S_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6S13|1|A|G|24
6S13|1|A|U|25
6S13|1|A|G|26
6S13|1|A|G|27
6S13|1|A|A|28
6S13|1|A|U|29
6S13|1|A|G|30
*
6S13|1|A|C|555
6S13|1|A|U|556
6S13|1|A|G|557
6S13|1|A|A|558
6S13|1|A|A|559
6S13|1|A|A|560
6S13|1|A|C|561
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain O
- 50S ribosomal protein L20
- Chain Q
- 50S ribosomal protein L22
- Chain Z
- 50S ribosomal protein L32
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