3D structure

PDB id
6S13 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.58 Å

Loop

Sequence
GGGAG*CUUUGAUC
Length
13 nucleotides
Bulged bases
6S13|1|A|U|100
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S13_004 not in the Motif Atlas
Homologous match to IL_7A0S_004
Geometric discrepancy: 0.4414
The information below is about IL_7A0S_004
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_94910.1
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L
Number of instances in this motif group
3

Unit IDs

6S13|1|A|G|81
6S13|1|A|G|82
6S13|1|A|G|83
6S13|1|A|A|84
6S13|1|A|G|85
*
6S13|1|A|C|97
6S13|1|A|U|98
6S13|1|A|U|99
6S13|1|A|U|100
6S13|1|A|G|101
6S13|1|A|A|102
6S13|1|A|U|103
6S13|1|A|C|104

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain S
50S ribosomal protein L24
Chain W
50S ribosomal protein L29

Coloring options:


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