IL_6S13_004
3D structure
- PDB id
- 6S13 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.58 Å
Loop
- Sequence
- GGGAG*CUUUGAUC
- Length
- 13 nucleotides
- Bulged bases
- 6S13|1|A|U|100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S13_004 not in the Motif Atlas
- Homologous match to IL_7A0S_004
- Geometric discrepancy: 0.4414
- The information below is about IL_7A0S_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_94910.1
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6S13|1|A|G|81
6S13|1|A|G|82
6S13|1|A|G|83
6S13|1|A|A|84
6S13|1|A|G|85
*
6S13|1|A|C|97
6S13|1|A|U|98
6S13|1|A|U|99
6S13|1|A|U|100
6S13|1|A|G|101
6S13|1|A|A|102
6S13|1|A|U|103
6S13|1|A|C|104
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain S
- 50S ribosomal protein L24
- Chain W
- 50S ribosomal protein L29
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