3D structure

PDB id
6S13 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.58 Å

Loop

Sequence
GAGAACUG*CUUAGUACC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S13_007 not in the Motif Atlas
Homologous match to IL_4WF9_008
Geometric discrepancy: 0.1432
The information below is about IL_4WF9_008
Detailed Annotation
9x8 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_84694.2
Basepair signature
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
Number of instances in this motif group
3

Unit IDs

6S13|1|A|G|190
6S13|1|A|A|191
6S13|1|A|G|192
6S13|1|A|A|193
6S13|1|A|A|194
6S13|1|A|C|195
6S13|1|A|U|196
6S13|1|A|G|197
*
6S13|1|A|C|204
6S13|1|A|U|205
6S13|1|A|U|206
6S13|1|A|A|207
6S13|1|A|G|208
6S13|1|A|U|209
6S13|1|A|A|210
6S13|1|A|C|211
6S13|1|A|C|212

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain J
50S ribosomal protein L15
Chain V
50S ribosomal protein L28

Coloring options:


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