3D structure

PDB id
6S13 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.58 Å

Loop

Sequence
UGUAC*GGUAG
Length
10 nucleotides
Bulged bases
6S13|1|A|U|2716, 6S13|1|A|A|2717
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S13_098 not in the Motif Atlas
Homologous match to IL_5J7L_348
Geometric discrepancy: 0.1171
The information below is about IL_5J7L_348
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_23774.1
Basepair signature
cWW-L-R-L-tHS-cWW
Number of instances in this motif group
11

Unit IDs

6S13|1|A|U|2714
6S13|1|A|G|2715
6S13|1|A|U|2716
6S13|1|A|A|2717
6S13|1|A|C|2718
*
6S13|1|A|G|2745
6S13|1|A|G|2746
6S13|1|A|U|2747
6S13|1|A|A|2748
6S13|1|A|G|2749

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain L
50S ribosomal protein L17
Chain N
50S ribosomal protein L19

Coloring options:


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