3D structure

PDB id
6S13 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.58 Å

Loop

Sequence
CAAAC*GGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S13_141 not in the Motif Atlas
Geometric match to IL_4V88_436
Geometric discrepancy: 0.3337
The information below is about IL_4V88_436
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.4
Basepair signature
cWW-R-L-tHS-tHW-cWW
Number of instances in this motif group
18

Unit IDs

6S13|1|a|C|787
6S13|1|a|A|788
6S13|1|a|A|789
6S13|1|a|A|790
6S13|1|a|C|791
*
6S13|1|a|G|807
6S13|1|a|G|808
6S13|1|a|U|809
6S13|1|a|A|810
6S13|1|a|G|811

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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