IL_6SGC_037

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

6SGC|1|54|G|748, 6SGC|1|54|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_037 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1871

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6SGC|1|54|G|745
6SGC|1|54|A|746
6SGC|1|54|A|747
6SGC|1|54|G|748
6SGC|1|54|G|749
6SGC|1|54|U|750
6SGC|1|54|G|751
6SGC|1|54|G|752
*
6SGC|1|54|U|911
6SGC|1|54|G|912
6SGC|1|54|U|913
6SGC|1|54|U|914
6SGC|1|54|A|915
6SGC|1|54|C|916
6SGC|1|54|A|917
6SGC|1|54|G|918
6SGC|1|54|C|919

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain M2

Ribosomal protein L14

Chain S2

eL20