IL_6SGC_053

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAAG*CUAGUAGC

Length

13 nucleotides

Bulged bases

6SGC|1|54|A|1650, 6SGC|1|54|G|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_053 not in the Motif Atlas

Homologous match to IL_5TBW_028

Geometric discrepancy: 0.0721

The information below is about IL_5TBW_028

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.7

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6SGC|1|54|G|1522
6SGC|1|54|A|1523
6SGC|1|54|A|1524
6SGC|1|54|A|1525
6SGC|1|54|G|1526
*
6SGC|1|54|C|1648
6SGC|1|54|U|1649
6SGC|1|54|A|1650
6SGC|1|54|G|1651
6SGC|1|54|U|1652
6SGC|1|54|A|1653
6SGC|1|54|G|1654
6SGC|1|54|C|1655

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain C2

uL4

Chain L2

eL13

Chain N2

Ribosomal protein L15

Chain a2

Ribosomal_L18e/L15P domain-containing protein

Chain j2

Ribosomal protein L37