IL_6SGC_076
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 6SGC|1|54|U|1930, 6SGC|1|54|C|1931, 6SGC|1|54|G|2055, 6SGC|1|54|A|2057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_076 not in the Motif Atlas
- Homologous match to IL_5TBW_051
- Geometric discrepancy: 0.137
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6SGC|1|54|C|1926
6SGC|1|54|U|1927
6SGC|1|54|C|1928
6SGC|1|54|A|1929
6SGC|1|54|U|1930
6SGC|1|54|C|1931
6SGC|1|54|A|1932
6SGC|1|54|G|1933
*
6SGC|1|54|C|2053
6SGC|1|54|U|2054
6SGC|1|54|G|2055
6SGC|1|54|G|2056
6SGC|1|54|A|2057
6SGC|1|54|G|2058
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain H2
- uL6
- Chain M2
- Ribosomal protein L14
- Chain O2
- uL13
- Chain S2
- eL20
- Chain m2
- eL40
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