IL_6SGC_079

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

6SGC|1|54|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_079 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2727

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6SGC|1|54|U|1957
6SGC|1|54|A|1958
6SGC|1|54|U|1959
6SGC|1|54|A|1960
6SGC|1|54|G|1961
6SGC|1|54|A|1962
6SGC|1|54|C|1963
6SGC|1|54|A|1964
6SGC|1|54|G|1965
*
6SGC|1|54|C|2022
6SGC|1|54|C|2023
6SGC|1|54|G|2024
6SGC|1|54|A|2025
6SGC|1|54|A|2026

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain S2

eL20

Chain m2

eL40

Chain s2

uL10