IL_6SGC_082
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGC*GGUG
- Length
- 7 nucleotides
- Bulged bases
- 6SGC|1|54|G|2343
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_082 not in the Motif Atlas
- Homologous match to IL_5TBW_057
- Geometric discrepancy: 0.0802
- The information below is about IL_5TBW_057
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- Isolated cWS basepair
- Motif group
- IL_73554.3
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 10
Unit IDs
6SGC|1|54|C|2290
6SGC|1|54|G|2291
6SGC|1|54|C|2292
*
6SGC|1|54|G|2342
6SGC|1|54|G|2343
6SGC|1|54|U|2344
6SGC|1|54|G|2345
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain 84
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C2
- uL4
- Chain a2
- Ribosomal_L18e/L15P domain-containing protein
- Chain e2
- eL32
- Chain r2
- Ribosomal_L28e domain-containing protein
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