IL_6SGC_086

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_086 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.0839

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6SGC|1|54|G|2358
6SGC|1|54|U|2359
6SGC|1|54|A|2360
6SGC|1|54|G|2361
6SGC|1|54|U|2362
6SGC|1|54|A|2363
6SGC|1|54|G|2364
*
6SGC|1|54|C|3858
6SGC|1|54|G|3859
6SGC|1|54|A|3860
6SGC|1|54|A|3861
6SGC|1|54|A|3862
6SGC|1|54|C|3863

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain C2

uL4

Chain P2

uL22