IL_6SGC_099

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_099 not in the Motif Atlas

Homologous match to IL_5TBW_074

Geometric discrepancy: 0.1005

The information below is about IL_5TBW_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6SGC|1|54|A|2832
6SGC|1|54|A|2833
6SGC|1|54|C|2834
6SGC|1|54|A|2835
6SGC|1|54|A|2836
6SGC|1|54|U|2837
6SGC|1|54|G|2838
*
6SGC|1|54|C|3850
6SGC|1|54|U|3851
6SGC|1|54|A|3852
6SGC|1|54|U|3853

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain P2

uL22

Chain d2

eL31