IL_6SGC_109

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

6SGC|1|54|A|3746, 6SGC|1|54|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_109 not in the Motif Atlas

Homologous match to IL_5TBW_085

Geometric discrepancy: 0.1193

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6SGC|1|54|U|3704
6SGC|1|54|G|3705
*
6SGC|1|54|U|3745
6SGC|1|54|A|3746
6SGC|1|54|A|3747
6SGC|1|54|A|3748

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain A2

Ribosomal protein L8