IL_6SGC_125

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAG*CGUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_125 not in the Motif Atlas

Geometric match to IL_5TBW_099

Geometric discrepancy: 0.0794

The information below is about IL_5TBW_099

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_71241.2

Basepair signature

cWW-cWW-tSH-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6SGC|1|54|C|4243
6SGC|1|54|A|4244
6SGC|1|54|G|4245
*
6SGC|1|54|C|4263
6SGC|1|54|G|4264
6SGC|1|54|U|4265
6SGC|1|54|G|4266
6SGC|1|54|G|4267

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain 74

5S ribosomal RNA; 5S rRNA

Chain D2

60S ribosomal protein L5

Chain J2

Ribosomal protein L11

Chain T2

eL21