IL_6SGC_127

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUGA*UACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_127 not in the Motif Atlas

Homologous match to IL_5TBW_100

Geometric discrepancy: 0.2758

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6SGC|1|54|U|4295
6SGC|1|54|U|4296
6SGC|1|54|G|4297
6SGC|1|54|A|4298
*
6SGC|1|54|U|4312
6SGC|1|54|A|4313
6SGC|1|54|C|4314
6SGC|1|54|A|4315

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain D2

60S ribosomal protein L5

Chain Q2

eL18

Chain T2

eL21

Chain b2

eL29

Chain o2

eL42