IL_6SGC_142

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

6SGC|1|54|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_142 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1407

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6SGC|1|54|C|4582
6SGC|1|54|C|4583
6SGC|1|54|A|4584
6SGC|1|54|U|4585
*
6SGC|1|54|A|4717
6SGC|1|54|G|4718
6SGC|1|54|G|4719
6SGC|1|54|C|4720
6SGC|1|54|G|4721

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain O2

uL13