IL_6SGC_144

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_144 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.0956

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6SGC|1|54|C|4596
6SGC|1|54|U|4597
6SGC|1|54|C|4598
6SGC|1|54|A|4599
6SGC|1|54|G|4600
6SGC|1|54|U|4601
6SGC|1|54|A|4602
6SGC|1|54|C|4603
*
6SGC|1|54|G|4608
6SGC|1|54|G|4609
6SGC|1|54|A|4610
6SGC|1|54|A|4611
6SGC|1|54|C|4612
6SGC|1|54|C|4613
6SGC|1|54|G|4614

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain H2

uL6

Chain V2

Ribosomal protein L23

Chain m2

eL40