IL_6SGC_160

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

6SGC|1|54|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_160 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.1734

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6SGC|1|54|G|5000
6SGC|1|54|U|5001
6SGC|1|54|U|5002
*
6SGC|1|54|G|5045
6SGC|1|54|U|5046
6SGC|1|54|C|5047
6SGC|1|54|A|5048
6SGC|1|54|G|5049
6SGC|1|54|C|5050

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain d2

eL31