IL_6SGC_181

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

6SGC|1|A1|G|113, 6SGC|1|A1|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_181 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.139

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6SGC|1|A1|U|112
6SGC|1|A1|G|113
6SGC|1|A1|G|114
6SGC|1|A1|U|115
*
6SGC|1|A1|A|348
6SGC|1|A1|A|349

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain F1

40S ribosomal protein S4

Chain J1

40S ribosomal protein S8

Chain M1

Ribosomal protein S11