IL_6SGC_187

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

6SGC|1|A1|U|305, 6SGC|1|A1|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_187 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3909

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6SGC|1|A1|C|216
6SGC|1|A1|A|217
6SGC|1|A1|U|218
6SGC|1|A1|U|219
*
6SGC|1|A1|A|302
6SGC|1|A1|C|303
6SGC|1|A1|C|304
6SGC|1|A1|U|305
6SGC|1|A1|C|306
6SGC|1|A1|G|307
6SGC|1|A1|G|308
6SGC|1|A1|G|309

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain F1

40S ribosomal protein S4

Chain J1

40S ribosomal protein S8