IL_6SGC_197

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCACUC*GGAG

Length

10 nucleotides

Bulged bases

6SGC|1|A1|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_197 not in the Motif Atlas

Homologous match to IL_4V88_408

Geometric discrepancy: 0.0961

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6SGC|1|A1|C|491
6SGC|1|A1|C|492
6SGC|1|A1|A|493
6SGC|1|A1|C|494
6SGC|1|A1|U|495
6SGC|1|A1|C|496
*
6SGC|1|A1|G|506
6SGC|1|A1|G|507
6SGC|1|A1|A|508
6SGC|1|A1|G|509

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain F1

40S ribosomal protein S4

Chain K1

Ribosomal protein S9 (Predicted)

Chain Z1

eS24