IL_6SGC_203

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6SGC|1|A1|A|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_203 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.1721

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6SGC|1|A1|G|611
6SGC|1|A1|U|612
6SGC|1|A1|G|613
6SGC|1|A1|C|614
6SGC|1|A1|C|615
6SGC|1|A1|A|616
6SGC|1|A1|G|617
*
6SGC|1|A1|C|624
6SGC|1|A1|G|625
6SGC|1|A1|G|626
6SGC|1|A1|U|627
6SGC|1|A1|A|628
6SGC|1|A1|A|629
6SGC|1|A1|U|630
6SGC|1|A1|U|631
6SGC|1|A1|C|632

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain E1

uS5

Chain Y1

uS12

Chain f1

40S ribosomal protein S30

Chain i1

polyA mRNA