IL_6SGC_207
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_207 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.086
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6SGC|1|A1|C|676
6SGC|1|A1|G|677
6SGC|1|A1|U|678
6SGC|1|A1|A|679
6SGC|1|A1|G|680
*
6SGC|1|A1|U|1025
6SGC|1|A1|C|1026
6SGC|1|A1|A|1027
6SGC|1|A1|A|1028
6SGC|1|A1|G|1029
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain 54
- Large subunit ribosomal RNA; LSU rRNA
- Chain M1
- Ribosomal protein S11
- Chain O1
- Ribosomal_S13_N domain-containing protein
- Chain X1
- Ribosomal protein S15a
- Chain Y1
- uS12
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