IL_6SGC_218

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_218 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.0665

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6SGC|1|A1|G|942
6SGC|1|A1|U|943
6SGC|1|A1|A|944
6SGC|1|A1|U|945
*
6SGC|1|A1|A|981
6SGC|1|A1|G|982
6SGC|1|A1|A|983
6SGC|1|A1|C|984

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain A2

Ribosomal protein L8

Chain C1

40S ribosomal protein S3a

Chain P1

uS11