IL_6SGC_242
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 6SGC|1|A1|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_242 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.3435
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6SGC|1|A1|C|1395
6SGC|1|A1|A|1396
6SGC|1|A1|U|1397
6SGC|1|A1|G|1398
6SGC|1|A1|C|1399
*
6SGC|1|A1|G|1447
6SGC|1|A1|A|1448
6SGC|1|A1|G|1449
6SGC|1|A1|G|1450
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain R1
- Ribosomal protein S16
- Chain S1
- eS17
- Chain V1
- Ribosomal_S10 domain-containing protein
- Chain h1
- WD_REPEATS_REGION domain-containing protein
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