IL_6SGC_275
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 6SGC|1|A1|C|1331, 6SGC|1|A1|U|1494, 6SGC|1|A1|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_275 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.0892
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SGC|1|A1|U|1329
6SGC|1|A1|G|1330
6SGC|1|A1|C|1331
6SGC|1|A1|A|1332
6SGC|1|A1|U|1333
6SGC|1|A1|G|1334
6SGC|1|A1|G|1335
*
6SGC|1|A1|U|1492
6SGC|1|A1|C|1493
6SGC|1|A1|U|1494
6SGC|1|A1|G|1495
6SGC|1|A1|U|1496
6SGC|1|A1|G|1497
6SGC|1|A1|A|1498
6SGC|1|A1|U|1499
6SGC|1|A1|G|1500
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain E1
- uS5
- Chain L1
- S10_plectin domain-ontaining protein
- Chain V1
- Ribosomal_S10 domain-containing protein
- Chain e1
- uS14
- Chain i1
- polyA mRNA
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