IL_6SJ6_009
3D structure
- PDB id
- 6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- GCAC*GAGUGAAAUAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 6SJ6|1|A|U|549, 6SJ6|1|A|A|553
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SJ6_009 not in the Motif Atlas
- Homologous match to IL_4WF9_015
- Geometric discrepancy: 0.1629
- The information below is about IL_4WF9_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
6SJ6|1|A|G|527
6SJ6|1|A|C|528
6SJ6|1|A|A|529
6SJ6|1|A|C|530
*
6SJ6|1|A|G|541
6SJ6|1|A|A|542
6SJ6|1|A|G|543
6SJ6|1|A|U|544
6SJ6|1|A|G|545
6SJ6|1|A|A|546
6SJ6|1|A|A|547
6SJ6|1|A|A|548
6SJ6|1|A|U|549
6SJ6|1|A|A|550
6SJ6|1|A|G|551
6SJ6|1|A|A|552
6SJ6|1|A|A|553
6SJ6|1|A|C|554
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain V
- 50S ribosomal protein L22
- Chain X
- 50S ribosomal protein L24
Coloring options: