3D structure

PDB id
6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
GCAC*GAGUGAAAUAGAAC
Length
18 nucleotides
Bulged bases
6SJ6|1|A|U|549, 6SJ6|1|A|A|553
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6SJ6_009 not in the Motif Atlas
Homologous match to IL_4WF9_015
Geometric discrepancy: 0.1629
The information below is about IL_4WF9_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

6SJ6|1|A|G|527
6SJ6|1|A|C|528
6SJ6|1|A|A|529
6SJ6|1|A|C|530
*
6SJ6|1|A|G|541
6SJ6|1|A|A|542
6SJ6|1|A|G|543
6SJ6|1|A|U|544
6SJ6|1|A|G|545
6SJ6|1|A|A|546
6SJ6|1|A|A|547
6SJ6|1|A|A|548
6SJ6|1|A|U|549
6SJ6|1|A|A|550
6SJ6|1|A|G|551
6SJ6|1|A|A|552
6SJ6|1|A|A|553
6SJ6|1|A|C|554

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain V
50S ribosomal protein L22
Chain X
50S ribosomal protein L24

Coloring options:


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