IL_6SKF_097

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

C(4AC)(OMG)U*GCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_097 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.1913

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6SKF|1|BA|C|417
6SKF|1|BA|4AC|418
6SKF|1|BA|OMG|419
6SKF|1|BA|U|420
*
6SKF|1|BA|G|435
6SKF|1|BA|C|436
6SKF|1|BA|G|437
6SKF|1|BA|G|438

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BP

50S ribosomal protein L15e

Chain Bl

50S ribosomal protein L44e