IL_6SKF_155

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UAUAAG*UGAAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_155 not in the Motif Atlas

Geometric match to IL_9E6Q_072

Geometric discrepancy: 0.3817

The information below is about IL_9E6Q_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

6SKF|1|BA|U|1623
6SKF|1|BA|A|1624
6SKF|1|BA|U|1625
6SKF|1|BA|A|1626
6SKF|1|BA|A|1627
6SKF|1|BA|G|1628
*
6SKF|1|BA|U|1660
6SKF|1|BA|G|1661
6SKF|1|BA|A|1662
6SKF|1|BA|A|1663
6SKF|1|BA|A|1664
6SKF|1|BA|G|1665

Current chains

Chain BA

23S rRNA

Nearby chains

Chain Be

50S ribosomal protein L34e