IL_6SKF_190
3D structure
- PDB id
- 6SKF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CAG*CGUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SKF_190 not in the Motif Atlas
- Geometric match to IL_5TBW_099
- Geometric discrepancy: 0.1619
- The information below is about IL_5TBW_099
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
6SKF|1|BA|C|2400
6SKF|1|BA|A|2401
6SKF|1|BA|G|2402
*
6SKF|1|BA|C|2420
6SKF|1|BA|G|2421
6SKF|1|BA|U|2422
6SKF|1|BA|A|2423
6SKF|1|BA|G|2424
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain BF
- 50S ribosomal protein L5
- Chain BQ
- 50S ribosomal protein L18
- Chain BU
- 50S ribosomal protein L21e
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