IL_6SKF_206

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CUGAG*CGAAAACAG

Length

14 nucleotides

Bulged bases

6SKF|1|BA|A|2879, 6SKF|1|BA|C|2882

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_206 not in the Motif Atlas

Geometric match to IL_4V9F_091

Geometric discrepancy: 0.1624

The information below is about IL_4V9F_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6SKF|1|BA|C|2740
6SKF|1|BA|U|2741
6SKF|1|BA|G|2742
6SKF|1|BA|A|2743
6SKF|1|BA|G|2744
*
6SKF|1|BA|C|2876
6SKF|1|BA|G|2877
6SKF|1|BA|A|2878
6SKF|1|BA|A|2879
6SKF|1|BA|A|2880
6SKF|1|BA|A|2881
6SKF|1|BA|C|2882
6SKF|1|BA|A|2883
6SKF|1|BA|G|2884

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L13