IL_6SKF_257

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

(OMG)G(A2M)GUAG*(OMC)GAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG, A2M, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_257 not in the Motif Atlas

Homologous match to IL_4V9F_049

Geometric discrepancy: 0.159

The information below is about IL_4V9F_049

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

6SKF|1|BA|OMG|1398
6SKF|1|BA|G|1399
6SKF|1|BA|A2M|1400
6SKF|1|BA|G|1401
6SKF|1|BA|U|1402
6SKF|1|BA|A|1403
6SKF|1|BA|G|1404
*
6SKF|1|BA|OMC|2124
6SKF|1|BA|G|2125
6SKF|1|BA|A|2126
6SKF|1|BA|A|2127
6SKF|1|BA|A|2128
6SKF|1|BA|C|2129

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BV

50S ribosomal protein L22