IL_6SPF_041
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPF_041 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.2267
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6SPF|1|A|A|1249
6SPF|1|A|U|1250
6SPF|1|A|G|1251
6SPF|1|A|A|1252
6SPF|1|A|G|1253
6SPF|1|A|U|1254
6SPF|1|A|A|1255
6SPF|1|A|A|1256
*
6SPF|1|A|U|1998
6SPF|1|A|G|1999
6SPF|1|A|A|2000
6SPF|1|A|A|2001
6SPF|1|A|A|2002
6SPF|1|A|U|2003
6SPF|1|A|U|2004
Current chains
- Chain A
- Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L4
- Chain S
- 50S ribosomal protein L22
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