IL_6SPF_062

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6SPF|1|A|A|1788, 6SPF|1|A|C|1803, 6SPF|1|A|U|1807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPF_062 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1083

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6SPF|1|A|U|1785
6SPF|1|A|G|1786
6SPF|1|A|C|1787
6SPF|1|A|A|1788
6SPF|1|A|A|1789
6SPF|1|A|A|1790
6SPF|1|A|C|1791
*
6SPF|1|A|G|1800
6SPF|1|A|G|1801
6SPF|1|A|A|1802
6SPF|1|A|C|1803
6SPF|1|A|G|1804
6SPF|1|A|U|1805
6SPF|1|A|A|1806
6SPF|1|A|U|1807
6SPF|1|A|A|1808

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA