IL_6SPF_125
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6SPF|1|a|A|526, 6SPF|1|a|U|528, 6SPF|1|a|A|529
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPF_125 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2244
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6SPF|1|a|G|509
6SPF|1|a|U|510
6SPF|1|a|G|511
6SPF|1|a|C|512
6SPF|1|a|C|513
6SPF|1|a|A|514
6SPF|1|a|G|515
*
6SPF|1|a|C|522
6SPF|1|a|G|523
6SPF|1|a|G|524
6SPF|1|a|U|525
6SPF|1|a|A|526
6SPF|1|a|A|527
6SPF|1|a|U|528
6SPF|1|a|A|529
6SPF|1|a|C|530
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
Coloring options: