IL_6SPG_171
3D structure
- PDB id
- 6SPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- CAGAAG*CCACG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPG_171 not in the Motif Atlas
- Homologous match to IL_5J7L_063
- Geometric discrepancy: 0.1449
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SPG|1|a|C|1424
6SPG|1|a|A|1425
6SPG|1|a|G|1426
6SPG|1|a|A|1427
6SPG|1|a|A|1428
6SPG|1|a|G|1429
*
6SPG|1|a|C|1460
6SPG|1|a|C|1461
6SPG|1|a|A|1462
6SPG|1|a|C|1463
6SPG|1|a|G|1464
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- 50S ribosomal protein L19
- Chain t
- 30S ribosomal protein S20
Coloring options: