IL_6SV4_032

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6SV4|1|2|A|579, 6SV4|1|2|U|581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_032 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1653

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6SV4|1|2|G|562
6SV4|1|2|U|563
6SV4|1|2|G|564
6SV4|1|2|C|565
6SV4|1|2|C|566
6SV4|1|2|A|567
6SV4|1|2|G|568
*
6SV4|1|2|C|575
6SV4|1|2|G|576
6SV4|1|2|G|577
6SV4|1|2|U|578
6SV4|1|2|A|579
6SV4|1|2|A|580
6SV4|1|2|U|581
6SV4|1|2|U|582
6SV4|1|2|C|583

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

40S ribosomal protein S3

Chain c

40S ribosomal protein S23-A

Chain g

40S ribosomal protein S30-A