IL_6SV4_033

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6SV4|1|2|A|619

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_033 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1755

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

6SV4|1|2|G|616
6SV4|1|2|U|617
6SV4|1|2|U|618
6SV4|1|2|A|619
6SV4|1|2|A|620
6SV4|1|2|A|621
6SV4|1|2|A|622
*
6SV4|1|2|U|1104
6SV4|1|2|C|1105

Current chains

Chain 2

18S rRNA

Nearby chains

Chain c

40S ribosomal protein S23-A

Chain e

40S ribosomal protein S26-A